PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G005600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 405aa    MW: 42893.1 Da    PI: 4.4257
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G005600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.23.6e-15181393127
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyat..gkrknratksgyWkatgk 88 
                          G+rFhP+ ee ++ yL+  ++g +  +++ +i+++ +y+  P dL +++    ++++ yf+s+ ++   +  g r +ra++   W +   
  Brast05G005600.1.p  18 FGLRFHPSAEEAISVYLRCWIAGAPvPDAAGIIHHAAVYSRPPADLAAAFPRlpRTHDRYFYSTCRRVPIRggGYRVSRAVAGVSWGSNT- 107
                         79***********************4445567**************85333333566889999998876642378*****99999*9664. PP

                 NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                         +k+v ++ +ge  g  +tL +         ktdW+m+e++
  Brast05G005600.1.p 108 NKPVEDAmTGEXLGFVETLKYG--------KTDWLMEEFH 139
                         4777774466667777777765........9********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-2112161IPR003441NAC domain
PROSITE profilePS5100519.99316161IPR003441NAC domain
PfamPF023652.9E-819139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MAAPLPSTVL SPIAALSFGL RFHPSAEEAI SVYLRCWIAG APVPDAAGII HHAAVYSRPP  60
ADLAAAFPRL PRTHDRYFYS TCRRVPIRGG GYRVSRAVAG VSWGSNTNKP VEDAMTGEXL  120
GFVETLKYGK TDWLMEEFHR LPEDAAADGA AERVLCRLYV KGHAKPDSLA LAESLAGDLL  180
LQQAAMADAQ QRMPPSSPRN RRVMALPVLP EPAPVKKRAA PVAEPPRPKK RTRAAAPAAS  240
PVMASPPAPP AVPRVALRQL PRPSWCPPPP AGLLALEPRR PAPAVASAAZ XSPAAAAAHD  300
ELVALVLSGV EEEDDSAAGQ EDDDDQDLGD FASALETDLE TTEEDGGGDA GSRSLEGLAA  360
DERGDDDIAM DMDDVFNDLG DEEDDGDGAW KSIPLSDYTD LQYS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191201RMPPSSPRNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239312.11e-145PREDICTED: translation initiation factor IF-2-like
TrEMBLA0A0Q3EQ521e-142A0A0Q3EQ52_BRADI; Uncharacterized protein
STRINGBRADI4G26470.11e-102(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2262136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.14e-14NAC domain containing protein 50